Super Enhancer Details

General details

Super-Enhancer ID:	SE_00399
Genomic locus:	chr10:13690360-13762439
Size/Length:	72079 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_012247
Gene Symbol:	SEPHS1
Chromosome:	chr10
TSS:	13359437 (Transcription start site)
TES:	13390298 (Transcription end site)
Strand:	-
Number of Exons:	8
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>:-

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00399

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C000746	SE_00399	chr10	13690360	13692099	1739	166.34
C000747	SE_00399	chr10	13693117	13696882	3765	606.3
C000748	SE_00399	chr10	13700566	13703433	2867	1039.07
C000749	SE_00399	chr10	13706869	13708499	1630	171
C000750	SE_00399	chr10	13709841	13711398	1557	256.45
C000751	SE_00399	chr10	13721489	13722428	939	146.66
C000752	SE_00399	chr10	13724801	13730300	5499	3100
C000753	SE_00399	chr10	13730557	13734165	3608	607.52
C000754	SE_00399	chr10	13737280	13742417	5137	1262.15
C000755	SE_00399	chr10	13747975	13750985	3010	1206.76
C000756	SE_00399	chr10	13753917	13755835	1918	331.6
C000757	SE_00399	chr10	13757931	13759533	1602	109.05
C000758	SE_00399	chr10	13759562	13762439	2877	1233.8