Super Enhancer Details

General details

Super-Enhancer ID:	SE_00402
Genomic locus:	chr10:3845037-3930906
Size/Length:	85869 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NR_027653
Gene Symbol:	KLF6
Chromosome:	chr10
TSS:	3818187 (Transcription start site)
TES:	3827473 (Transcription end site)
Strand:	-
Number of Exons:	3
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00402

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C000697	SE_00402	chr10	3845037	3857309	12272	3230.05
C000698	SE_00402	chr10	3866627	3872821	6194	2535.94
C000699	SE_00402	chr10	3872873	3874512	1639	211.01
C000700	SE_00402	chr10	3881841	3883487	1646	626.59
C000701	SE_00402	chr10	3891394	3896782	5388	2579.97
C000702	SE_00402	chr10	3902291	3903954	1663	165.01
C000703	SE_00402	chr10	3915033	3916720	1687	387.22
C000704	SE_00402	chr10	3916891	3918409	1518	173.81
C000705	SE_00402	chr10	3927977	3930906	2929	1203.93