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Super Enhancer Details

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General details

Super-Enhancer ID: SE_00404
Genomic locus: chr19:11230342-11321546
Size/Length: 91204 bp
Genome: Human - hg19
Cell/Tissue: Adipose Nuclei
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM621401
Reference: Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID: NM_015493
Gene Symbol: KANK2
Chromosome: chr19
TSS: 11274942 (Transcription start site)
TES: 11305266 (Transcription end site)
Strand: -
Number of Exons: 11
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence



>chr19:11230342-11321546
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00404

Constituent ID SE ID Chrom Start End Constituent Size MACS score
C002951 SE_00404 chr19 11230342 11231897 1555 310.24
C002952 SE_00404 chr19 11240747 11243095 2348 583.26
C002953 SE_00404 chr19 11247650 11250961 3311 1134.8
C002954 SE_00404 chr19 11252239 11255117 2878 836.65
C002955 SE_00404 chr19 11263125 11264447 1322 121.69
C002956 SE_00404 chr19 11266071 11267469 1398 145.05
C002957 SE_00404 chr19 11267921 11268959 1038 94.87
C002958 SE_00404 chr19 11269766 11271525 1759 386.95
C002959 SE_00404 chr19 11274168 11278003 3835 3100
C002960 SE_00404 chr19 11282711 11283903 1192 98.16
C002961 SE_00404 chr19 11288279 11289918 1639 176.45
C002962 SE_00404 chr19 11289988 11291940 1952 458.27
C002963 SE_00404 chr19 11291949 11292674 725 90.16
C002964 SE_00404 chr19 11294329 11296785 2456 286.25
C002965 SE_00404 chr19 11299917 11310480 10563 1344.19
C002966 SE_00404 chr19 11312981 11317270 4289 1462.07
C002967 SE_00404 chr19 11320051 11321546 1495 200.51