Super Enhancer Details

General details

Super-Enhancer ID:	SE_00405
Genomic locus:	chr19:48216283-48249592
Size/Length:	33309 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_015710
Gene Symbol:	GLTSCR2
Chromosome:	chr19
TSS:	48248792 (Transcription start site)
TES:	48260323 (Transcription end site)
Strand:	+
Number of Exons:	13
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00405

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C003051	SE_00405	chr19	48216283	48219345	3062	2858.94
C003052	SE_00405	chr19	48219433	48228588	9155	3100
C003053	SE_00405	chr19	48228683	48230749	2066	445.84
C003054	SE_00405	chr19	48230883	48234933	4050	3100
C003055	SE_00405	chr19	48244209	48249592	5383	3100