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Super Enhancer Details

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General details

Super-Enhancer ID: SE_00405
Genomic locus: chr19:48216283-48249592
Size/Length: 33309 bp
Genome: Mouse -
Cell/Tissue: Adipose Nuclei
Factor(s) Used: - (Used to define enhancers)
- (Used to rank SEs)
Input/WCE: GSM621401
Reference: Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID: NM_015710
Gene Symbol: GLTSCR2
Chromosome: chr19
TSS: 48248792 (Transcription start site)
TES: 48260323 (Transcription end site)
Strand: +
Number of Exons: 13
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence



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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00405

Constituent ID SE ID Chrom Start End Constituent Size MACS score
C003051 SE_00405 chr19 48216283 48219345 3062 2858.94
C003052 SE_00405 chr19 48219433 48228588 9155 3100
C003053 SE_00405 chr19 48228683 48230749 2066 445.84
C003054 SE_00405 chr19 48230883 48234933 4050 3100
C003055 SE_00405 chr19 48244209 48249592 5383 3100