Super Enhancer Details

General details

Super-Enhancer ID:	SE_00406
Genomic locus:	chr3:112344841-112374149
Size/Length:	29308 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_199511
Gene Symbol:	CCDC80
Chromosome:	chr3
TSS:	112323232 (Transcription start site)
TES:	112359990 (Transcription end site)
Strand:	-
Number of Exons:	8
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr3:112344841-112374149
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00406

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C004241	SE_00406	chr3	112344841	112363441	18600	3100
C004242	SE_00406	chr3	112364149	112367519	3370	794.95
C004243	SE_00406	chr3	112369149	112371097	1948	251.9
C004244	SE_00406	chr3	112371189	112374149	2960	738.91