Super Enhancer Details

General details

Super-Enhancer ID:	SE_00408
Genomic locus:	chr2:174849607-174929101
Size/Length:	79494 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_001172712
Gene Symbol:	SP3
Chromosome:	chr2
TSS:	174771186 (Transcription start site)
TES:	174830430 (Transcription end site)
Strand:	-
Number of Exons:	7
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr2:174849607-174929101
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00408

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C003511	SE_00408	chr2	174849607	174852894	3287	1207.84
C003512	SE_00408	chr2	174853141	174857542	4401	1342.2
C003513	SE_00408	chr2	174861723	174863564	1841	172.95
C003514	SE_00408	chr2	174863601	174864976	1375	93.85
C003515	SE_00408	chr2	174869057	174870517	1460	140.01
C003516	SE_00408	chr2	174875500	174880772	5272	3100
C003517	SE_00408	chr2	174887535	174891451	3916	3156.13
C003518	SE_00408	chr2	174899973	174903299	3326	418.49
C003519	SE_00408	chr2	174903663	174905391	1728	494.12
C003520	SE_00408	chr2	174916204	174919331	3127	648.24
C003521	SE_00408	chr2	174926239	174929101	2862	920.17