Super Enhancer Details

General details

Super-Enhancer ID:	SE_00410
Genomic locus:	chr19:2028324-2065846
Size/Length:	37522 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_017572
Gene Symbol:	MKNK2
Chromosome:	chr19
TSS:	2037469 (Transcription start site)
TES:	2051243 (Transcription end site)
Strand:	-
Number of Exons:	14
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr19:2028324-2065846
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00410

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C002906	SE_00410	chr19	2028324	2029295	971	101.75
C002907	SE_00410	chr19	2031261	2034229	2968	1310.47
C002908	SE_00410	chr19	2040386	2053186	12800	3100
C002909	SE_00410	chr19	2053634	2057071	3437	1087.09
C002910	SE_00410	chr19	2057482	2062843	5361	3100
C002911	SE_00410	chr19	2064401	2065846	1445	213.95