Super Enhancer Details

General details

Super-Enhancer ID:	SE_00411
Genomic locus:	chr1:212456875-212491476
Size/Length:	34601 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_006243
Gene Symbol:	PPP2R5A
Chromosome:	chr1
TSS:	212458878 (Transcription start site)
TES:	212535205 (Transcription end site)
Strand:	+
Number of Exons:	13
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr1:212456875-212491476
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00411

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C000641	SE_00411	chr1	212456875	212470551	13676	3100
C000642	SE_00411	chr1	212472345	212478007	5662	2290.7
C000643	SE_00411	chr1	212480105	212481618	1513	184.4
C000644	SE_00411	chr1	212483012	212484537	1525	215.62
C000645	SE_00411	chr1	212485219	212488062	2843	347.07
C000646	SE_00411	chr1	212488086	212491476	3390	387.52