Super Enhancer Details

General details

Super-Enhancer ID:	SE_00412
Genomic locus:	chr3:14833931-14933772
Size/Length:	99841 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_003298
Gene Symbol:	NR2C2
Chromosome:	chr3
TSS:	14989090 (Transcription start site)
TES:	15090786 (Transcription end site)
Strand:	+
Number of Exons:	15
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr3:14833931-14933772
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00412

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C003992	SE_00412	chr3	14833931	14836182	2251	333.13
C003993	SE_00412	chr3	14843585	14848237	4652	1005.86
C003994	SE_00412	chr3	14848752	14850386	1634	238.34
C003995	SE_00412	chr3	14850982	14852210	1228	295.1
C003996	SE_00412	chr3	14852248	14856457	4209	1537.48
C003997	SE_00412	chr3	14864217	14866798	2581	322.87
C003998	SE_00412	chr3	14872803	14875982	3179	357.15
C003999	SE_00412	chr3	14876449	14881610	5161	1533.96
C004000	SE_00412	chr3	14883129	14884817	1688	158.59
C004001	SE_00412	chr3	14887685	14895317	7632	1335.78
C004002	SE_00412	chr3	14901265	14905986	4721	697.81
C004003	SE_00412	chr3	14912705	14914061	1356	124.42
C004004	SE_00412	chr3	14916493	14919876	3383	564.92
C004005	SE_00412	chr3	14932271	14933772	1501	172.49