Super Enhancer Details

General details

Super-Enhancer ID:	SE_00413
Genomic locus:	chr8:93072858-93121637
Size/Length:	48779 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_001198629
Gene Symbol:	RUNX1T1
Chromosome:	chr8
TSS:	92967194 (Transcription start site)
TES:	93075191 (Transcription end site)
Strand:	-
Number of Exons:	11
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr8:93072858-93121637
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00413

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C005759	SE_00413	chr8	93072858	93075413	2555	293.85
C005760	SE_00413	chr8	93082620	93084681	2061	513.29
C005761	SE_00413	chr8	93086604	93093141	6537	1400.36
C005762	SE_00413	chr8	93094261	93095699	1438	125.12
C005763	SE_00413	chr8	93096929	93098503	1574	148.67
C005764	SE_00413	chr8	93106505	93119361	12856	3100
C005765	SE_00413	chr8	93119900	93121637	1737	260.1