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Super Enhancer Details

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General details

Super-Enhancer ID: SE_00414
Genomic locus: chr1:118643694-118691805
Size/Length: 48111 bp
Genome: Mouse -
Cell/Tissue: Adipose Nuclei
Factor(s) Used: - (Used to define enhancers)
- (Used to rank SEs)
Input/WCE: GSM621401
Reference: Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID: NM_006784
Gene Symbol: WDR3
Chromosome: chr1
TSS: 118472371 (Transcription start site)
TES: 118503049 (Transcription end site)
Strand: +
Number of Exons: 27
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence



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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00414

Constituent ID SE ID Chrom Start End Constituent Size MACS score
C000385 SE_00414 chr1 118643694 118645298 1604 159.92
C000386 SE_00414 chr1 118652772 118666822 14050 3100
C000387 SE_00414 chr1 118677125 118680910 3785 2306.43
C000388 SE_00414 chr1 118686392 118688168 1776 221.73
C000389 SE_00414 chr1 118689286 118691805 2519 855.59