Super Enhancer Details

General details

Super-Enhancer ID:	SE_00415
Genomic locus:	chr13:75977616-76067892
Size/Length:	90276 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_014832
Gene Symbol:	TBC1D4
Chromosome:	chr13
TSS:	75858799 (Transcription start site)
TES:	76056250 (Transcription end site)
Strand:	-
Number of Exons:	21
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00415

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C001864	SE_00415	chr13	75977616	75981318	3702	612.56
C001865	SE_00415	chr13	75987369	75994003	6634	1670.33
C001866	SE_00415	chr13	76001550	76008237	6687	1650.25
C001867	SE_00415	chr13	76018939	76021784	2845	1461.27
C001868	SE_00415	chr13	76023852	76025252	1400	171.05
C001869	SE_00415	chr13	76025536	76027796	2260	769.56
C001870	SE_00415	chr13	76032505	76034176	1671	116.89
C001871	SE_00415	chr13	76040831	76043608	2777	1215.83
C001872	SE_00415	chr13	76046617	76048420	1803	127.21
C001873	SE_00415	chr13	76050508	76052716	2208	145.5
C001874	SE_00415	chr13	76053394	76058064	4670	1807.32
C001875	SE_00415	chr13	76065920	76067892	1972	236.56