Toggle navigation

  • Home
  • Browse Database
  • Detailed Search
  • Visualize & Send Data
  • Download Data
  • Overlap Analysis
  • Statistics
  • Documentation
  • Data Sources
  • Submit Data
  • Contact Us
  • News & Tweets

Follow @dbSUPER_THU

Super Enhancer Details

  1. Home
  2. Browse
  3. Details

General details

Super-Enhancer ID: SE_00415
Genomic locus: chr13:75977616-76067892
Size/Length: 90276 bp
Genome: Mouse -
Cell/Tissue: Adipose Nuclei
Factor(s) Used: - (Used to define enhancers)
- (Used to rank SEs)
Input/WCE: GSM621401
Reference: Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID: NM_014832
Gene Symbol: TBC1D4
Chromosome: chr13
TSS: 75858799 (Transcription start site)
TES: 76056250 (Transcription end site)
Strand: -
Number of Exons: 21
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence



>:-

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00415

Constituent ID SE ID Chrom Start End Constituent Size MACS score
C001864 SE_00415 chr13 75977616 75981318 3702 612.56
C001865 SE_00415 chr13 75987369 75994003 6634 1670.33
C001866 SE_00415 chr13 76001550 76008237 6687 1650.25
C001867 SE_00415 chr13 76018939 76021784 2845 1461.27
C001868 SE_00415 chr13 76023852 76025252 1400 171.05
C001869 SE_00415 chr13 76025536 76027796 2260 769.56
C001870 SE_00415 chr13 76032505 76034176 1671 116.89
C001871 SE_00415 chr13 76040831 76043608 2777 1215.83
C001872 SE_00415 chr13 76046617 76048420 1803 127.21
C001873 SE_00415 chr13 76050508 76052716 2208 145.5
C001874 SE_00415 chr13 76053394 76058064 4670 1807.32
C001875 SE_00415 chr13 76065920 76067892 1972 236.56