Super Enhancer Details

General details

Super-Enhancer ID:	SE_00417
Genomic locus:	chr15:81276493-81318536
Size/Length:	42043 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_022566
Gene Symbol:	MESDC1
Chromosome:	chr15
TSS:	81293294 (Transcription start site)
TES:	81296345 (Transcription end site)
Strand:	+
Number of Exons:	1
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr15:81276493-81318536
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00417

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C002369	SE_00417	chr15	81276493	81277632	1139	103.2
C002370	SE_00417	chr15	81280868	81285310	4442	3100
C002371	SE_00417	chr15	81291424	81300855	9431	3100
C002372	SE_00417	chr15	81306415	81311095	4680	2016.21
C002373	SE_00417	chr15	81315051	81318536	3485	3100