Super Enhancer Details

General details

Super-Enhancer ID:	SE_00420
Genomic locus:	chr8:38262390-38326669
Size/Length:	64279 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_001174065
Gene Symbol:	FGFR1
Chromosome:	chr8
TSS:	38268655 (Transcription start site)
TES:	38326352 (Transcription end site)
Strand:	-
Number of Exons:	18
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00420

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C005707	SE_00420	chr8	38262390	38263876	1486	167.9
C005708	SE_00420	chr8	38263942	38267871	3929	1026.86
C005709	SE_00420	chr8	38267953	38270868	2915	419.54
C005710	SE_00420	chr8	38271029	38272663	1634	224.2
C005711	SE_00420	chr8	38280919	38282406	1487	127.9
C005712	SE_00420	chr8	38287515	38290118	2603	336
C005713	SE_00420	chr8	38297927	38300427	2500	499.81
C005714	SE_00420	chr8	38301752	38304883	3131	575.02
C005715	SE_00420	chr8	38306090	38310494	4404	3100
C005716	SE_00420	chr8	38311338	38312798	1460	108.7
C005717	SE_00420	chr8	38315623	38318066	2443	455.31
C005718	SE_00420	chr8	38320604	38326669	6065	3100