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Super Enhancer Details

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General details

Super-Enhancer ID: SE_00421
Genomic locus: chr11:95920045-96001583
Size/Length: 81538 bp
Genome: Mouse -
Cell/Tissue: Adipose Nuclei
Factor(s) Used: - (Used to define enhancers)
- (Used to rank SEs)
Input/WCE: GSM621401
Reference: Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID: NR_036125
Gene Symbol: MIR1260B
Chromosome: chr11
TSS: 96074601 (Transcription start site)
TES: 96074690 (Transcription end site)
Strand: +
Number of Exons: 1
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence



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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00421

Constituent ID SE ID Chrom Start End Constituent Size MACS score
C001388 SE_00421 chr11 95920045 95922444 2399 314.68
C001389 SE_00421 chr11 95926527 95928531 2004 280.48
C001390 SE_00421 chr11 95929517 95932269 2752 154.56
C001391 SE_00421 chr11 95932292 95935017 2725 810.9
C001392 SE_00421 chr11 95936439 95938464 2025 167.05
C001393 SE_00421 chr11 95939880 95942518 2638 671.7
C001394 SE_00421 chr11 95944576 95950265 5689 1121.75
C001395 SE_00421 chr11 95951841 95955433 3592 445.19
C001396 SE_00421 chr11 95959512 95964018 4506 829.48
C001397 SE_00421 chr11 95971020 95973320 2300 155.14
C001398 SE_00421 chr11 95973587 95977998 4411 3100
C001399 SE_00421 chr11 95979281 95981192 1911 181.25
C001400 SE_00421 chr11 95986267 95987988 1721 268.93
C001401 SE_00421 chr11 95990695 95994185 3490 582.84
C001402 SE_00421 chr11 95995548 95998700 3152 682.24
C001403 SE_00421 chr11 95999818 96001583 1765 146.27