Super Enhancer Details

General details

Super-Enhancer ID:	SE_00422
Genomic locus:	chr3:123321658-123381533
Size/Length:	59875 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_198402
Gene Symbol:	PTPLB
Chromosome:
TSS:	(Transcription start site)
TES:	(Transcription end site)
Strand:
Number of Exons:
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00422

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C004273	SE_00422	chr3	123321658	123325157	3499	317.17
C004274	SE_00422	chr3	123335993	123338842	2849	943.49
C004275	SE_00422	chr3	123340739	123342620	1881	208.26
C004276	SE_00422	chr3	123347859	123350050	2191	224.99
C004277	SE_00422	chr3	123352037	123356797	4760	1975.82
C004278	SE_00422	chr3	123359435	123364511	5076	2048
C004279	SE_00422	chr3	123369998	123381533	11535	3100