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Super Enhancer Details

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General details

Super-Enhancer ID: SE_00423
Genomic locus: chr16:24985615-25027756
Size/Length: 42141 bp
Genome: Mouse -
Cell/Tissue: Adipose Nuclei
Factor(s) Used: - (Used to define enhancers)
- (Used to rank SEs)
Input/WCE: GSM621401
Reference: Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID: NM_001006634
Gene Symbol: ARHGAP17
Chromosome: chr16
TSS: 24930704 (Transcription start site)
TES: 25026699 (Transcription end site)
Strand: -
Number of Exons: 19
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence



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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00423

Constituent ID SE ID Chrom Start End Constituent Size MACS score
C002477 SE_00423 chr16 24985615 24993172 7557 2348.18
C002478 SE_00423 chr16 24994393 25001890 7497 3100
C002479 SE_00423 chr16 25010409 25012332 1923 286.05
C002480 SE_00423 chr16 25013071 25014113 1042 95.47
C002481 SE_00423 chr16 25016133 25020104 3971 672.75
C002482 SE_00423 chr16 25020387 25027756 7369 3100