Super Enhancer Details

General details

Super-Enhancer ID:	SE_00423
Genomic locus:	chr16:24985615-25027756
Size/Length:	42141 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_001006634
Gene Symbol:	ARHGAP17
Chromosome:	chr16
TSS:	24930704 (Transcription start site)
TES:	25026699 (Transcription end site)
Strand:	-
Number of Exons:	19
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00423

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C002477	SE_00423	chr16	24985615	24993172	7557	2348.18
C002478	SE_00423	chr16	24994393	25001890	7497	3100
C002479	SE_00423	chr16	25010409	25012332	1923	286.05
C002480	SE_00423	chr16	25013071	25014113	1042	95.47
C002481	SE_00423	chr16	25016133	25020104	3971	672.75
C002482	SE_00423	chr16	25020387	25027756	7369	3100