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Super Enhancer Details

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General details

Super-Enhancer ID: SE_00424
Genomic locus: chr8:130944190-131028814
Size/Length: 84624 bp
Genome: Mouse -
Cell/Tissue: Adipose Nuclei
Factor(s) Used: - (Used to define enhancers)
- (Used to rank SEs)
Input/WCE: GSM621401
Reference: Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID: NM_016623
Gene Symbol: FAM49B
Chromosome: chr8
TSS: 130851838 (Transcription start site)
TES: 130952118 (Transcription end site)
Strand: -
Number of Exons: 13
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence



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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00424

Constituent ID SE ID Chrom Start End Constituent Size MACS score
C005800 SE_00424 chr8 130944190 130945880 1690 217.07
C005801 SE_00424 chr8 130949242 130953894 4652 2045.16
C005802 SE_00424 chr8 130955952 130961505 5553 2391.61
C005803 SE_00424 chr8 130964954 130966830 1876 156.58
C005804 SE_00424 chr8 130970131 130971359 1228 138.01
C005805 SE_00424 chr8 130983337 130986305 2968 464.77
C005806 SE_00424 chr8 130990002 130992481 2479 270.42
C005807 SE_00424 chr8 130993323 130995538 2215 543.78
C005808 SE_00424 chr8 130995649 130999944 4295 891.63
C005809 SE_00424 chr8 131005970 131012415 6445 2432.56
C005810 SE_00424 chr8 131024122 131025843 1721 137.93
C005811 SE_00424 chr8 131026081 131028814 2733 753.75