Super Enhancer Details

General details

Super-Enhancer ID:	SE_00424
Genomic locus:	chr8:130944190-131028814
Size/Length:	84624 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_016623
Gene Symbol:	FAM49B
Chromosome:	chr8
TSS:	130851838 (Transcription start site)
TES:	130952118 (Transcription end site)
Strand:	-
Number of Exons:	13
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00424

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C005800	SE_00424	chr8	130944190	130945880	1690	217.07
C005801	SE_00424	chr8	130949242	130953894	4652	2045.16
C005802	SE_00424	chr8	130955952	130961505	5553	2391.61
C005803	SE_00424	chr8	130964954	130966830	1876	156.58
C005804	SE_00424	chr8	130970131	130971359	1228	138.01
C005805	SE_00424	chr8	130983337	130986305	2968	464.77
C005806	SE_00424	chr8	130990002	130992481	2479	270.42
C005807	SE_00424	chr8	130993323	130995538	2215	543.78
C005808	SE_00424	chr8	130995649	130999944	4295	891.63
C005809	SE_00424	chr8	131005970	131012415	6445	2432.56
C005810	SE_00424	chr8	131024122	131025843	1721	137.93
C005811	SE_00424	chr8	131026081	131028814	2733	753.75