Super Enhancer Details

General details

Super-Enhancer ID:	SE_00425
Genomic locus:	chr8:134227875-134311366
Size/Length:	83491 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_006096
Gene Symbol:	NDRG1
Chromosome:	chr8
TSS:	134249413 (Transcription start site)
TES:	134309547 (Transcription end site)
Strand:	-
Number of Exons:	14
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr8:134227875-134311366
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00425

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C005821	SE_00425	chr8	134227875	134230274	2399	421.13
C005822	SE_00425	chr8	134239458	134240853	1395	104.04
C005823	SE_00425	chr8	134242193	134245712	3519	1281.54
C005824	SE_00425	chr8	134248620	134251650	3030	1837.67
C005825	SE_00425	chr8	134259349	134260740	1391	97.83
C005826	SE_00425	chr8	134261292	134262357	1065	92.26
C005827	SE_00425	chr8	134270370	134273420	3050	314.63
C005828	SE_00425	chr8	134276469	134277977	1508	286.7
C005829	SE_00425	chr8	134285087	134286646	1559	172.42
C005830	SE_00425	chr8	134291557	134292736	1179	111.46
C005831	SE_00425	chr8	134297596	134299618	2022	220.58
C005832	SE_00425	chr8	134301340	134311366	10026	3100