Super Enhancer Details

General details

Super-Enhancer ID:	SE_00431
Genomic locus:	chr8:22485795-22532270
Size/Length:	46475 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NR_027715
Gene Symbol:	BIN3-IT1
Chromosome:	chr8
TSS:	22497883 (Transcription start site)
TES:	22499722 (Transcription end site)
Strand:	-
Number of Exons:	1
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>:-

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00431

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C005648	SE_00431	chr8	22485795	22487899	2104	215.3
C005649	SE_00431	chr8	22489152	22490442	1290	100.91
C005650	SE_00431	chr8	22492421	22495385	2964	1006.15
C005651	SE_00431	chr8	22497725	22505585	7860	3100
C005652	SE_00431	chr8	22507771	22510494	2723	333.08
C005653	SE_00431	chr8	22513314	22518011	4697	3100
C005654	SE_00431	chr8	22521460	22527716	6256	3100
C005655	SE_00431	chr8	22529280	22532270	2990	945.48