Super Enhancer Details

General details

Super-Enhancer ID:	SE_00432
Genomic locus:	chr8:13049401-13146988
Size/Length:	97587 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_006094
Gene Symbol:	DLC1
Chromosome:	chr8
TSS:	12940871 (Transcription start site)
TES:	12973753 (Transcription end site)
Strand:	-
Number of Exons:	14
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00432

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C005611	SE_00432	chr8	13049401	13053871	4470	2105.82
C005612	SE_00432	chr8	13060324	13061974	1650	170.59
C005613	SE_00432	chr8	13064864	13066747	1883	249.65
C005614	SE_00432	chr8	13076989	13079210	2221	527.06
C005615	SE_00432	chr8	13079410	13083249	3839	758.84
C005616	SE_00432	chr8	13091247	13095162	3915	567.04
C005617	SE_00432	chr8	13096028	13098128	2100	123.6
C005618	SE_00432	chr8	13101686	13106942	5256	2529.41
C005619	SE_00432	chr8	13115198	13116706	1508	103.12
C005620	SE_00432	chr8	13127443	13129692	2249	681.55
C005621	SE_00432	chr8	13130270	13135089	4819	2678.9
C005622	SE_00432	chr8	13143735	13146988	3253	362.78