Super Enhancer Details

General details

Super-Enhancer ID:	SE_00435
Genomic locus:	chr6:34982996-35022165
Size/Length:	39169 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_015245
Gene Symbol:	ANKS1A
Chromosome:	chr6
TSS:	34857037 (Transcription start site)
TES:	35059190 (Transcription end site)
Strand:	+
Number of Exons:	24
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00435

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C005096	SE_00435	chr6	34982996	34995425	12429	2393.04
C005097	SE_00435	chr6	34996038	34997394	1356	147.26
C005098	SE_00435	chr6	34997557	34999906	2349	228.44
C005099	SE_00435	chr6	35001108	35004428	3320	676.04
C005100	SE_00435	chr6	35007510	35018852	11342	3100
C005101	SE_00435	chr6	35020881	35022165	1284	125.55