Super Enhancer Details

General details

Super-Enhancer ID:	SE_00437
Genomic locus:	chr1:154377018-154436889
Size/Length:	59871 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_181359
Gene Symbol:	IL6R
Chromosome:	chr1
TSS:	154377668 (Transcription start site)
TES:	154441926 (Transcription end site)
Strand:	+
Number of Exons:	10
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr1:154377018-154436889
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00437

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C000468	SE_00437	chr1	154377018	154382465	5447	3100
C000469	SE_00437	chr1	154390273	154397370	7097	3100
C000470	SE_00437	chr1	154399481	154401751	2270	649.94
C000471	SE_00437	chr1	154403931	154408447	4516	2727.59
C000472	SE_00437	chr1	154410501	154413087	2586	310.88
C000473	SE_00437	chr1	154413491	154415294	1803	162.27
C000474	SE_00437	chr1	154417920	154419740	1820	284.73
C000475	SE_00437	chr1	154425294	154427061	1767	345.78
C000476	SE_00437	chr1	154435280	154436889	1609	332.78