Super Enhancer Details

General details

Super-Enhancer ID:	SE_00440
Genomic locus:	chr4:89711946-89752781
Size/Length:	40835 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_001015045
Gene Symbol:	FAM13A
Chromosome:	chr4
TSS:	89647104 (Transcription start site)
TES:	89744512 (Transcription end site)
Strand:	-
Number of Exons:	18
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00440

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C004530	SE_00440	chr4	89711946	89715504	3558	383.44
C004531	SE_00440	chr4	89717927	89720156	2229	262.91
C004532	SE_00440	chr4	89721815	89732988	11173	799.62
C004533	SE_00440	chr4	89733141	89734565	1424	94.95
C004534	SE_00440	chr4	89738394	89746010	7616	3100
C004535	SE_00440	chr4	89746854	89748225	1371	106.88
C004536	SE_00440	chr4	89748729	89752781	4052	1533.54