Super Enhancer Details

General details

Super-Enhancer ID:	SE_00444
Genomic locus:	chr16:81499775-81590004
Size/Length:	90229 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_030629
Gene Symbol:	CMIP
Chromosome:	chr16
TSS:	81528953 (Transcription start site)
TES:	81745367 (Transcription end site)
Strand:	+
Number of Exons:	21
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00444

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C002544	SE_00444	chr16	81499775	81501143	1368	215.47
C002545	SE_00444	chr16	81506426	81507944	1518	138.85
C002546	SE_00444	chr16	81511701	81513693	1992	268.58
C002547	SE_00444	chr16	81518204	81520775	2571	314.56
C002548	SE_00444	chr16	81524300	81530348	6048	3121.42
C002549	SE_00444	chr16	81534128	81537418	3290	442.05
C002550	SE_00444	chr16	81546333	81554698	8365	2400.62
C002551	SE_00444	chr16	81559076	81562033	2957	818
C002552	SE_00444	chr16	81571340	81573711	2371	487.09
C002553	SE_00444	chr16	81583610	81590004	6394	1857.31