Super Enhancer Details

General details

Super-Enhancer ID:	SE_00445
Genomic locus:	chr3:142565285-142610037
Size/Length:	44752 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_013363
Gene Symbol:	PCOLCE2
Chromosome:	chr3
TSS:	142536701 (Transcription start site)
TES:	142608045 (Transcription end site)
Strand:	-
Number of Exons:	9
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr3:142565285-142610037
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00445

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C004342	SE_00445	chr3	142565285	142575807	10522	2974.98
C004343	SE_00445	chr3	142575878	142577384	1506	175
C004344	SE_00445	chr3	142579461	142583530	4069	354.4
C004345	SE_00445	chr3	142588567	142590139	1572	198.45
C004346	SE_00445	chr3	142594838	142600224	5386	2710.11
C004347	SE_00445	chr3	142602112	142610037	7925	3100