Super Enhancer Details

General details

Super-Enhancer ID:	SE_00446
Genomic locus:	chr9:37988079-38070472
Size/Length:	82393 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_003028
Gene Symbol:	SHB
Chromosome:	chr9
TSS:	37915894 (Transcription start site)
TES:	38069210 (Transcription end site)
Strand:	-
Number of Exons:	6
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr9:37988079-38070472
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00446

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C005927	SE_00446	chr9	37988079	37992023	3944	665.97
C005928	SE_00446	chr9	37992310	37996529	4219	1244.6
C005929	SE_00446	chr9	37996807	37997793	986	119.67
C005930	SE_00446	chr9	38007447	38010016	2569	382.75
C005931	SE_00446	chr9	38016624	38019194	2570	349.6
C005932	SE_00446	chr9	38023728	38028204	4476	1754.73
C005933	SE_00446	chr9	38031142	38034006	2864	1865.46
C005934	SE_00446	chr9	38035274	38037855	2581	638.57
C005935	SE_00446	chr9	38037884	38039884	2000	207.45
C005936	SE_00446	chr9	38045747	38049347	3600	1236.68
C005937	SE_00446	chr9	38057749	38063684	5935	1579.45
C005938	SE_00446	chr9	38065521	38070472	4951	1367.78