Super Enhancer Details

General details

Super-Enhancer ID:	SE_00449
Genomic locus:	chr11:3852445-3930490
Size/Length:	78045 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_003156
Gene Symbol:	STIM1
Chromosome:	chr11
TSS:	3876932 (Transcription start site)
TES:	4114440 (Transcription end site)
Strand:	+
Number of Exons:	12
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr11:3852445-3930490
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00449

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C001153	SE_00449	chr11	3852445	3854319	1874	227.19
C001154	SE_00449	chr11	3855356	3856936	1580	210.27
C001155	SE_00449	chr11	3858060	3863675	5615	3100
C001156	SE_00449	chr11	3874799	3880327	5528	3100
C001157	SE_00449	chr11	3885540	3890024	4484	1072.79
C001158	SE_00449	chr11	3898515	3899884	1369	96.51
C001159	SE_00449	chr11	3900952	3902702	1750	280.09
C001160	SE_00449	chr11	3914602	3916324	1722	337.54
C001161	SE_00449	chr11	3923832	3930490	6658	3100