Super Enhancer Details

General details

Super-Enhancer ID:	SE_00451
Genomic locus:	chr2:42323824-42376256
Size/Length:	52432 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_019063
Gene Symbol:	EML4
Chromosome:	chr2
TSS:	42396477 (Transcription start site)
TES:	42559688 (Transcription end site)
Strand:	+
Number of Exons:	22
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00451

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C003175	SE_00451	chr2	42323824	42331106	7282	3100
C003176	SE_00451	chr2	42336935	42338846	1911	286.84
C003177	SE_00451	chr2	42342889	42346575	3686	708.55
C003178	SE_00451	chr2	42352331	42354463	2132	412.29
C003179	SE_00451	chr2	42357045	42361304	4259	3100
C003180	SE_00451	chr2	42364757	42367065	2308	251.41
C003181	SE_00451	chr2	42367534	42370886	3352	3100
C003182	SE_00451	chr2	42373574	42376256	2682	981.21