Super Enhancer Details

General details

Super-Enhancer ID:	SE_00458
Genomic locus:	chr10:90638176-90713380
Size/Length:	75204 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_020799
Gene Symbol:	STAMBPL1
Chromosome:	chr10
TSS:	90639943 (Transcription start site)
TES:	90683259 (Transcription end site)
Strand:	+
Number of Exons:	11
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00458

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C000982	SE_00458	chr10	90638176	90644343	6167	3100
C000983	SE_00458	chr10	90647652	90649389	1737	112.74
C000984	SE_00458	chr10	90651605	90662489	10884	3100
C000985	SE_00458	chr10	90671903	90675467	3564	295.24
C000986	SE_00458	chr10	90679762	90681956	2194	287.83
C000987	SE_00458	chr10	90683479	90689145	5666	1950.44
C000988	SE_00458	chr10	90690589	90691785	1196	151.84
C000989	SE_00458	chr10	90691813	90693038	1225	134.69
C000990	SE_00458	chr10	90694432	90696130	1698	136.25
C000991	SE_00458	chr10	90708445	90713380	4935	1004.47