Super Enhancer Details

General details

Super-Enhancer ID:	SE_00460
Genomic locus:	chr4:129702779-129785133
Size/Length:	82354 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_024900
Gene Symbol:	JADE1
Chromosome:	chr4
TSS:	129732998 (Transcription start site)
TES:	129796379 (Transcription end site)
Strand:	+
Number of Exons:	11
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr4:129702779-129785133
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00460

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C004583	SE_00460	chr4	129702779	129705611	2832	891.3
C004584	SE_00460	chr4	129714211	129716382	2171	279.66
C004585	SE_00460	chr4	129720946	129723787	2841	572.91
C004586	SE_00460	chr4	129728665	129735859	7194	3100
C004587	SE_00460	chr4	129736135	129738945	2810	371.84
C004588	SE_00460	chr4	129739440	129750115	10675	2207.72
C004589	SE_00460	chr4	129751460	129754183	2723	383.23
C004590	SE_00460	chr4	129755953	129762337	6384	980.76
C004591	SE_00460	chr4	129764438	129766217	1779	189.85
C004592	SE_00460	chr4	129767538	129770443	2905	401.4
C004593	SE_00460	chr4	129780582	129781971	1389	139.17
C004594	SE_00460	chr4	129783547	129785133	1586	153.94