Super Enhancer Details

General details

Super-Enhancer ID:	SE_00464
Genomic locus:	chr1:164526670-164615375
Size/Length:	88705 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_004528
Gene Symbol:	MGST3
Chromosome:	chr1
TSS:	165600109 (Transcription start site)
TES:	165625372 (Transcription end site)
Strand:	+
Number of Exons:	6
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00464

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C000520	SE_00464	chr1	164526670	164535474	8804	3100
C000521	SE_00464	chr1	164538097	164539731	1634	269.18
C000522	SE_00464	chr1	164545302	164547778	2476	265.18
C000523	SE_00464	chr1	164557453	164559028	1575	202.8
C000524	SE_00464	chr1	164560311	164562595	2284	578.29
C000525	SE_00464	chr1	164570694	164573368	2674	540.7
C000526	SE_00464	chr1	164573422	164575189	1767	221.2
C000527	SE_00464	chr1	164577136	164581557	4421	1217.48
C000528	SE_00464	chr1	164584439	164588047	3608	435.23
C000529	SE_00464	chr1	164590367	164592215	1848	200
C000530	SE_00464	chr1	164604265	164607359	3094	472.95
C000531	SE_00464	chr1	164609573	164611870	2297	418.58
C000532	SE_00464	chr1	164613276	164615375	2099	474.65