Super Enhancer Details

General details

Super-Enhancer ID:	SE_00471
Genomic locus:	chr11:66641441-66703669
Size/Length:	62228 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_022172
Gene Symbol:	PC
Chromosome:	chr11
TSS:	66615996 (Transcription start site)
TES:	66725847 (Transcription end site)
Strand:	-
Number of Exons:	23
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00471

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C001287	SE_00471	chr11	66641441	66647963	6522	2042.67
C001288	SE_00471	chr11	66649578	66656547	6969	1597.56
C001289	SE_00471	chr11	66656822	66658304	1482	148.76
C001290	SE_00471	chr11	66658889	66660128	1239	130.32
C001291	SE_00471	chr11	66662592	66664061	1469	137.24
C001292	SE_00471	chr11	66668741	66670988	2247	560.44
C001293	SE_00471	chr11	66671189	66677506	6317	3100
C001294	SE_00471	chr11	66682812	66684289	1477	216.76
C001295	SE_00471	chr11	66686770	66690277	3507	855.01
C001296	SE_00471	chr11	66695957	66698180	2223	411.71
C001297	SE_00471	chr11	66698407	66703669	5262	1564.49