Super Enhancer Details

General details

Super-Enhancer ID:	SE_00472
Genomic locus:	chr9:110022093-110067694
Size/Length:	45601 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_002874
Gene Symbol:	RAD23B
Chromosome:	chr9
TSS:	110046333 (Transcription start site)
TES:	110094475 (Transcription end site)
Strand:	+
Number of Exons:	10
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>:-

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00472

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C005978	SE_00472	chr9	110022093	110024280	2187	401.18
C005979	SE_00472	chr9	110028437	110033515	5078	3100
C005980	SE_00472	chr9	110035405	110039698	4293	1782.99
C005981	SE_00472	chr9	110042743	110049617	6874	3100
C005982	SE_00472	chr9	110051962	110057268	5306	1511.72
C005983	SE_00472	chr9	110057342	110059096	1754	211.61
C005984	SE_00472	chr9	110060903	110064182	3279	561.03
C005985	SE_00472	chr9	110065680	110067694	2014	193.33