Super Enhancer Details

General details

Super-Enhancer ID:	SE_00474
Genomic locus:	chr6:53260872-53306802
Size/Length:	45930 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_021814
Gene Symbol:	ELOVL5
Chromosome:	chr6
TSS:	53132195 (Transcription start site)
TES:	53213977 (Transcription end site)
Strand:	-
Number of Exons:	7
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00474

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C005143	SE_00474	chr6	53260872	53263332	2460	434.25
C005144	SE_00474	chr6	53275229	53280224	4995	2234.12
C005145	SE_00474	chr6	53281359	53285392	4033	1559.14
C005146	SE_00474	chr6	53290478	53294728	4250	1735.21
C005147	SE_00474	chr6	53295619	53299897	4278	2535.95
C005148	SE_00474	chr6	53300036	53306802	6766	3100