Super Enhancer Details

General details

Super-Enhancer ID:	SE_00476
Genomic locus:	chr2:173912573-173958395
Size/Length:	45822 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_133646
Gene Symbol:	ZAK
Chromosome:	chr2
TSS:	173940564 (Transcription start site)
TES:	174132737 (Transcription end site)
Strand:	+
Number of Exons:	20
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00476

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C003504	SE_00476	chr2	173912573	173915672	3099	1098.9
C003505	SE_00476	chr2	173917432	173919351	1919	351.49
C003506	SE_00476	chr2	173922690	173925981	3291	392.46
C003507	SE_00476	chr2	173928374	173929919	1545	108.97
C003508	SE_00476	chr2	173939393	173945415	6022	3100
C003509	SE_00476	chr2	173946691	173950728	4037	820.97
C003510	SE_00476	chr2	173950781	173958395	7614	3100