Super Enhancer Details

General details

Super-Enhancer ID:	SE_00477
Genomic locus:	chr3:171963777-172039575
Size/Length:	75798 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_001190943
Gene Symbol:	TNFSF10
Chromosome:	chr3
TSS:	172223297 (Transcription start site)
TES:	172241297 (Transcription end site)
Strand:	-
Number of Exons:	3
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>:-

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00477

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C004429	SE_00477	chr3	171963777	171966423	2646	275.42
C004430	SE_00477	chr3	171973207	171981962	8755	3100
C004431	SE_00477	chr3	171985651	171987389	1738	195.21
C004432	SE_00477	chr3	171987675	171992130	4455	1075.12
C004433	SE_00477	chr3	171996515	171998939	2424	217.88
C004434	SE_00477	chr3	172004925	172010254	5329	591.36
C004435	SE_00477	chr3	172019317	172022448	3131	668.89
C004436	SE_00477	chr3	172032662	172034108	1446	109.37
C004437	SE_00477	chr3	172034809	172039575	4766	1098.41