Super Enhancer Details

General details

Super-Enhancer ID:	SE_00479
Genomic locus:	chr5:54779937-54835292
Size/Length:	55355 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NR_001575
Gene Symbol:	RNF138P1
Chromosome:	chr5
TSS:	54824669 (Transcription start site)
TES:	54830370 (Transcription end site)
Strand:	-
Number of Exons:	1
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr5:54779937-54835292
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00479

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C004749	SE_00479	chr5	54779937	54782325	2388	343.06
C004750	SE_00479	chr5	54789842	54791780	1938	130.45
C004751	SE_00479	chr5	54791991	54793076	1085	92.54
C004752	SE_00479	chr5	54798481	54799591	1110	125.2
C004753	SE_00479	chr5	54801519	54807740	6221	3100
C004754	SE_00479	chr5	54807963	54809632	1669	233.66
C004755	SE_00479	chr5	54810406	54832635	22229	1595.78
C004756	SE_00479	chr5	54833863	54835292	1429	187.93