Super Enhancer Details

General details

Super-Enhancer ID:	SE_00485
Genomic locus:	chr21:35012779-35077164
Size/Length:	64385 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_003024
Gene Symbol:	ITSN1
Chromosome:	chr21
TSS:	35014783 (Transcription start site)
TES:	35261609 (Transcription end site)
Strand:	+
Number of Exons:	40
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr21:35012779-35077164
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00485

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C003774	SE_00485	chr21	35012779	35019787	7008	3100
C003775	SE_00485	chr21	35019898	35021826	1928	178.64
C003776	SE_00485	chr21	35023026	35024982	1956	136.37
C003777	SE_00485	chr21	35026305	35035831	9526	915.96
C003778	SE_00485	chr21	35038742	35041748	3006	358.45
C003779	SE_00485	chr21	35042077	35043947	1870	227.75
C003780	SE_00485	chr21	35049860	35051584	1724	328.9
C003781	SE_00485	chr21	35054545	35059599	5054	2193.4
C003782	SE_00485	chr21	35059600	35062256	2656	359.22
C003783	SE_00485	chr21	35063066	35064161	1095	116.56
C003784	SE_00485	chr21	35067230	35069531	2301	303.89
C003785	SE_00485	chr21	35069578	35071743	2165	421.94
C003786	SE_00485	chr21	35075406	35077164	1758	264.23