Super Enhancer Details

General details

Super-Enhancer ID:	SE_00487
Genomic locus:	chr7:80479621-80551433
Size/Length:	71812 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_006379
Gene Symbol:	SEMA3C
Chromosome:	chr7
TSS:	80371853 (Transcription start site)
TES:	80548667 (Transcription end site)
Strand:	-
Number of Exons:	18
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00487

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C005416	SE_00487	chr7	80479621	80482367	2746	307.3
C005417	SE_00487	chr7	80485900	80489676	3776	575.55
C005418	SE_00487	chr7	80495661	80497773	2112	301.28
C005419	SE_00487	chr7	80497964	80501013	3049	355.35
C005420	SE_00487	chr7	80505629	80507357	1728	112.67
C005421	SE_00487	chr7	80508975	80515703	6728	1974.01
C005422	SE_00487	chr7	80518644	80521479	2835	1058.17
C005423	SE_00487	chr7	80524986	80527607	2621	314.61
C005424	SE_00487	chr7	80528503	80533204	4701	960.14
C005425	SE_00487	chr7	80533371	80536005	2634	335.55
C005426	SE_00487	chr7	80545102	80551433	6331	3100