Super Enhancer Details

General details

Super-Enhancer ID:	SE_00491
Genomic locus:	chr16:14394439-14434301
Size/Length:	39862 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NR_029854
Gene Symbol:	MIR365A
Chromosome:	chr16
TSS:	14403141 (Transcription start site)
TES:	14403228 (Transcription end site)
Strand:	+
Number of Exons:	1
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>:-

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00491

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C002450	SE_00491	chr16	14394439	14411046	16607	3100
C002451	SE_00491	chr16	14411464	14416687	5223	639.43
C002452	SE_00491	chr16	14416859	14418709	1850	191.82
C002453	SE_00491	chr16	14418752	14420938	2186	530.56
C002454	SE_00491	chr16	14432141	14434301	2160	414.11