Toggle navigation

  • Home
  • Browse Database
  • Detailed Search
  • Visualize & Send Data
  • Download Data
  • Overlap Analysis
  • Statistics
  • Documentation
  • Data Sources
  • Submit Data
  • Contact Us
  • News & Tweets

Follow @dbSUPER_THU

Super Enhancer Details

  1. Home
  2. Browse
  3. Details

General details

Super-Enhancer ID: SE_00491
Genomic locus: chr16:14394439-14434301
Size/Length: 39862 bp
Genome: Mouse -
Cell/Tissue: Adipose Nuclei
Factor(s) Used: - (Used to define enhancers)
- (Used to rank SEs)
Input/WCE: GSM621401
Reference: Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID: NR_029854
Gene Symbol: MIR365A
Chromosome: chr16
TSS: 14403141 (Transcription start site)
TES: 14403228 (Transcription end site)
Strand: +
Number of Exons: 1
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence



>:-

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00491

Constituent ID SE ID Chrom Start End Constituent Size MACS score
C002450 SE_00491 chr16 14394439 14411046 16607 3100
C002451 SE_00491 chr16 14411464 14416687 5223 639.43
C002452 SE_00491 chr16 14416859 14418709 1850 191.82
C002453 SE_00491 chr16 14418752 14420938 2186 530.56
C002454 SE_00491 chr16 14432141 14434301 2160 414.11