Super Enhancer Details

General details

Super-Enhancer ID:	SE_00492
Genomic locus:	chr6:46858644-46921314
Size/Length:	62670 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_001098518
Gene Symbol:	GPR116
Chromosome:
TSS:	(Transcription start site)
TES:	(Transcription end site)
Strand:
Number of Exons:
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>:-

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00492

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C005120	SE_00492	chr6	46858644	46860519	1875	210.13
C005121	SE_00492	chr6	46860739	46862140	1401	158.39
C005122	SE_00492	chr6	46863410	46864468	1058	123.48
C005123	SE_00492	chr6	46865433	46880670	15237	939.46
C005124	SE_00492	chr6	46883103	46884945	1842	227.83
C005125	SE_00492	chr6	46885218	46892433	7215	2825.04
C005126	SE_00492	chr6	46898528	46905455	6927	1789.91
C005127	SE_00492	chr6	46913069	46921314	8245	2160.26