Super Enhancer Details

General details

Super-Enhancer ID:	SE_00493
Genomic locus:	chr15:50166048-50210873
Size/Length:	44825 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_001144955
Gene Symbol:	DTWD1
Chromosome:	chr15
TSS:	49913225 (Transcription start site)
TES:	49937333 (Transcription end site)
Strand:	+
Number of Exons:	6
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00493

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C002190	SE_00493	chr15	50166048	50172483	6435	3100
C002191	SE_00493	chr15	50173528	50175201	1673	238.51
C002192	SE_00493	chr15	50179565	50182486	2921	482.51
C002193	SE_00493	chr15	50186737	50188841	2104	192.07
C002194	SE_00493	chr15	50190053	50197279	7226	3100
C002195	SE_00493	chr15	50207859	50210873	3014	1264.11