Super Enhancer Details

General details

Super-Enhancer ID:	SE_00495
Genomic locus:	chr16:24739832-24791328
Size/Length:	51496 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_014494
Gene Symbol:	TNRC6A
Chromosome:	chr16
TSS:	24741048 (Transcription start site)
TES:	24837547 (Transcription end site)
Strand:	+
Number of Exons:	25
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr16:24739832-24791328
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00495

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C002469	SE_00495	chr16	24739832	24754348	14516	2279.04
C002470	SE_00495	chr16	24754493	24761422	6929	736.88
C002471	SE_00495	chr16	24763119	24765631	2512	319.76
C002472	SE_00495	chr16	24767625	24770641	3016	370.34
C002473	SE_00495	chr16	24772566	24776128	3562	599.46
C002474	SE_00495	chr16	24776148	24777677	1529	210.69
C002475	SE_00495	chr16	24781347	24782796	1449	91.42
C002476	SE_00495	chr16	24784897	24791328	6431	2183.28