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Super Enhancer Details

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General details

Super-Enhancer ID: SE_00496
Genomic locus: chr6:34618640-34678202
Size/Length: 59562 bp
Genome: Mouse -
Cell/Tissue: Adipose Nuclei
Factor(s) Used: - (Used to define enhancers)
- (Used to rank SEs)
Input/WCE: GSM621401
Reference: Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID: NM_022758
Gene Symbol: C6orf106
Chromosome: chr6
TSS: 34555056 (Transcription start site)
TES: 34664627 (Transcription end site)
Strand: -
Number of Exons: 4
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence



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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00496

Constituent ID SE ID Chrom Start End Constituent Size MACS score
C005088 SE_00496 chr6 34618640 34619483 843 109.84
C005089 SE_00496 chr6 34619572 34621003 1431 213.48
C005090 SE_00496 chr6 34621499 34626881 5382 3100
C005091 SE_00496 chr6 34631005 34633565 2560 900.41
C005092 SE_00496 chr6 34636634 34642963 6329 2123.98
C005093 SE_00496 chr6 34648463 34649650 1187 123.17
C005094 SE_00496 chr6 34661418 34665807 4389 3100
C005095 SE_00496 chr6 34676710 34678202 1492 211.94