Super Enhancer Details

General details

Super-Enhancer ID:	SE_00496
Genomic locus:	chr6:34618640-34678202
Size/Length:	59562 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_022758
Gene Symbol:	C6orf106
Chromosome:	chr6
TSS:	34555056 (Transcription start site)
TES:	34664627 (Transcription end site)
Strand:	-
Number of Exons:	4
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>:-

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00496

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C005088	SE_00496	chr6	34618640	34619483	843	109.84
C005089	SE_00496	chr6	34619572	34621003	1431	213.48
C005090	SE_00496	chr6	34621499	34626881	5382	3100
C005091	SE_00496	chr6	34631005	34633565	2560	900.41
C005092	SE_00496	chr6	34636634	34642963	6329	2123.98
C005093	SE_00496	chr6	34648463	34649650	1187	123.17
C005094	SE_00496	chr6	34661418	34665807	4389	3100
C005095	SE_00496	chr6	34676710	34678202	1492	211.94