Super Enhancer Details

General details

Super-Enhancer ID:	SE_00497
Genomic locus:	chr12:96585837-96655525
Size/Length:	69688 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_005230
Gene Symbol:	ELK3
Chromosome:	chr12
TSS:	96588159 (Transcription start site)
TES:	96663613 (Transcription end site)
Strand:	+
Number of Exons:	5
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr12:96585837-96655525
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00497

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C001706	SE_00497	chr12	96585837	96593879	8042	3100
C001707	SE_00497	chr12	96600243	96602117	1874	141.85
C001708	SE_00497	chr12	96602278	96607915	5637	1589.35
C001709	SE_00497	chr12	96617510	96619890	2380	182.8
C001710	SE_00497	chr12	96626409	96629272	2863	644.32
C001711	SE_00497	chr12	96629631	96637525	7894	1684.87
C001712	SE_00497	chr12	96637738	96638735	997	111.79
C001713	SE_00497	chr12	96642566	96644854	2288	439.95
C001714	SE_00497	chr12	96646788	96653205	6417	1572.06
C001715	SE_00497	chr12	96654066	96655525	1459	146.72