Super Enhancer Details

General details

Super-Enhancer ID:	SE_00502
Genomic locus:	chr9:130823178-130866004
Size/Length:	42826 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_001006641
Gene Symbol:	SLC25A25
Chromosome:	chr9
TSS:	130860760 (Transcription start site)
TES:	130871537 (Transcription end site)
Strand:	+
Number of Exons:	10
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr9:130823178-130866004
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00502

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C006058	SE_00502	chr9	130823178	130824290	1112	159.01
C006059	SE_00502	chr9	130828605	130832303	3698	2884.22
C006060	SE_00502	chr9	130832523	130837289	4766	3100
C006061	SE_00502	chr9	130842515	130845246	2731	667.01
C006062	SE_00502	chr9	130854712	130858637	3925	2583.64
C006063	SE_00502	chr9	130859402	130866004	6602	3100