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Super Enhancer Details

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General details

Super-Enhancer ID: SE_00505
Genomic locus: chr5:148860541-148943578
Size/Length: 83037 bp
Genome: Human - hg19
Cell/Tissue: Adipose Nuclei
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM621401
Reference: Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID: NM_001892
Gene Symbol: CSNK1A1
Chromosome: chr5
TSS: 148875456 (Transcription start site)
TES: 148931115 (Transcription end site)
Strand: -
Number of Exons: 10
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence



>chr5:148860541-148943578
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00505

Constituent ID SE ID Chrom Start End Constituent Size MACS score
C004889 SE_00505 chr5 148860541 148863088 2547 766.54
C004890 SE_00505 chr5 148864620 148867237 2617 1029.93
C004891 SE_00505 chr5 148871435 148872742 1307 139.59
C004892 SE_00505 chr5 148876134 148878071 1937 188.44
C004893 SE_00505 chr5 148883033 148885140 2107 165.59
C004894 SE_00505 chr5 148894008 148895756 1748 116.34
C004895 SE_00505 chr5 148896677 148899863 3186 429.91
C004896 SE_00505 chr5 148906382 148908528 2146 121.26
C004897 SE_00505 chr5 148919172 148920232 1060 131.02
C004898 SE_00505 chr5 148922341 148924161 1820 350.76
C004899 SE_00505 chr5 148925833 148927755 1922 147.71
C004900 SE_00505 chr5 148928115 148932127 4012 3100
C004901 SE_00505 chr5 148940493 148941849 1356 106.55
C004902 SE_00505 chr5 148942041 148943578 1537 280.9