Super Enhancer Details

General details

Super-Enhancer ID:	SE_00508
Genomic locus:	chr1:94651936-94746233
Size/Length:	94297 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_004815
Gene Symbol:	ARHGAP29
Chromosome:	chr1
TSS:	94634462 (Transcription start site)
TES:	94703307 (Transcription end site)
Strand:	-
Number of Exons:	23
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00508

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C000331	SE_00508	chr1	94651936	94654156	2220	182.04
C000332	SE_00508	chr1	94658817	94661927	3110	262.26
C000333	SE_00508	chr1	94673894	94676216	2322	519.06
C000334	SE_00508	chr1	94680683	94685441	4758	492.74
C000335	SE_00508	chr1	94691442	94695312	3870	516.39
C000336	SE_00508	chr1	94695692	94703893	8201	2932.49
C000337	SE_00508	chr1	94709374	94713975	4601	1407.96
C000338	SE_00508	chr1	94719602	94721878	2276	224.83
C000339	SE_00508	chr1	94723089	94725927	2838	915.38
C000340	SE_00508	chr1	94730809	94732777	1968	128.73
C000341	SE_00508	chr1	94739903	94741731	1828	153.9
C000342	SE_00508	chr1	94741848	94746233	4385	1598.91