Super Enhancer Details

General details

Super-Enhancer ID:	SE_00510
Genomic locus:	chr16:66392306-66443386
Size/Length:	51080 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_001795
Gene Symbol:	CDH5
Chromosome:	chr16
TSS:	66400524 (Transcription start site)
TES:	66438689 (Transcription end site)
Strand:	+
Number of Exons:	12
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00510

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C002519	SE_00510	chr16	66392306	66406941	14635	3100
C002520	SE_00510	chr16	66406967	66408561	1594	222.42
C002521	SE_00510	chr16	66409145	66422384	13239	2445.33
C002522	SE_00510	chr16	66432641	66435971	3330	571.55
C002523	SE_00510	chr16	66441786	66443386	1600	173.95